ElectroMagCells2D.hpp

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/*
 * ElectroCells2D.hpp
 *
 *  Created on: Nov 14, 2014
 *      Author: cuda
 */

#ifndef ELECTROMAGCELLS2D_HPP_
#define ELECTROMAGCELLS2D_HPP_

#include "CellsBase.hpp"
#include "CellsFactoryReg.hpp"
#include "../cell/ElectroMagCell.hpp"
#include "../../../visual/visual.hpp"
#include "../../../common/common.hpp"

#include "tbb/tbb.h"

#include <cmath>
#include <iostream>
#include <vector>
#include <fstream>
#include <iterator>
#include <string>

namespace phoxonics {
namespace core {

class ElectroMagCells2D : public CellsBase {
public:
    ElectroMagCells2D();
    virtual ~ElectroMagCells2D();

    std::vector<std::vector<ElectroMagCell>> cells;

//    std::vector<ElectroMagCell> cells2;
//    tbb::concurrent_vector<ElectroMagCell> cells3;
//    void add_cell(int i);

    // configure cells
    void configure() override final;

    // print cells object
    void print_me() override final;

    // generate an h5 file from the group of cells
    void generate_cells_h5(std::string material_property) override final;

    void generate_cells_slice_h5(std::string component,
            std::shared_ptr<phoxonics::common::Hdf5Base> hdf5_base) override final;

    // visualize slice cells
    void visualize_cells_slice(std::string component,
            phoxonics::visual::GnuplotConfig gp_config) override final;

private:
    // visualization helper
    Gnuplot gp_;
    phoxonics::visual::Gnuplot2D gnuplot_2d_;
};

} /* namespace core */
} /* namespace phoxonics */

#endif /* ELECTROMAGCELLS2D_HPP_ */